DNA Binding Motif

						

			
Accessions: MA1564.2 (JASPAR 2024)

			
Names: SP9
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 10
Consensus: cCmCGCCCmc
Weblogo: 
PSSM: P0      A      C      G      T
01    566   2451    309    518      c
02    321   2451    113    284      C
03   2451   1127     56     96      m
04      2   2451     17      9      C
05    211    200   2451    173      G
06     22   2451      0     14      C
07      0   2451      0     30      C
08     39   2451     24    412      C
09   1192   1259     38    353      m
10    188   1863    191    588      c
Type: Heterodimer
Binding TFs: P0CG40 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
P0CG40
			
Publications: Pei J, Grishin NV. C2H2 zinc finger proteins of the SP/KLF, Wilms tumor, EGR, Huckebein, and Klumpfuss families in metazoans and beyond. Gene 573:91-9 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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