DNA Binding Motif

						

			
Accessions: RARA_methyl_3 (HT-SELEX2 May2017)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 10
Consensus: arAGGTCAcg
Weblogo: 
PSSM: P0      A      C      G      T
01   3031   2129   2334   2285      a
02   5666    366   4113    975      r
03   8205    288   1574      0      A
04      0      0   9779      0      G
05      0      0   9779    231      G
06      0      0      0   9779      T
07      0   9779      0      0      C
08   9779      0    117      0      A
09   2403   3532   1632   2212      c
10   1267   1851   5361   1299      g
Binding TFs: RARA (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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