DNA Binding Motif

						

			
Accessions: 6pmi_F (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor FliA
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Sigm28-transcription initiation complex with specific promoter at the state 1
Length: 14
Consensus: TgnGATaACGAGAT
Weblogo: 
PSSM: P0      A      C      G      T
01      8     11      8     69      T
02      8      8     61     19      g
03     24     24     24     24      n
04      0      0     96      0      G
05     96      0      0      0      A
06      0      0      0     96      T
07     61     19      8      8      a
08     96      0      0      0      A
09      0     96      0      0      C
10      0      0     96      0      G
11     96      0      0      0      A
12      0      0     96      0      G
13     96      0      0      0      A
14      0      0      0     96      T
Binding TFs: 6pmi_F (Sigma-70 region 3, Sigma-70 region 2 , Sigma-70, region 4, Sigma-70, region 4)
Binding Sites: 6pmi_1
6pmi_2
			
Publications: Shi W, Zhou W, Zhang B, Huang S, Jiang Y, Schammel A, Hu Y, Liu B. Structural basis of bacterial σ(28) -mediated transcription reveals roles of the RNA polymerase zinc-binding domain. EMBO J : (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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