DNA Binding Motif
| Accessions: | M1140_1.02 (CISBP 1.02) |
| Names: | CUP9, T100215_1.02 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Length: | 8 |
| Consensus: | TGACAcaw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.0477 0.0715 0.0120 0.8688 T 02 0.0001 0.0418 0.9580 0.0001 G 03 0.8123 0.0522 0.0313 0.1042 A 04 0.0001 0.9997 0.0001 0.0001 C 05 0.8956 0.0418 0.0626 0.0001 A 06 0.0216 0.6342 0.1721 0.1721 c 07 0.6445 0.1579 0.0396 0.1579 a 08 0.3529 0.0590 0.0198 0.5684 w |
| Binding TFs: | T100215_1.02 (Homeobox domain, Homeobox KN domain) |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
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