DNA Binding Motif

						

			
Accessions: M0628 (AthalianaCistrome v4_May2016)

			
Names: SND2.ampDAP, T17861;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: arCGTrwwgawsAMG
Weblogo: 
PSSM: P0      A      C      G      T
01    367      7     85    137      a
02    177     28    338     53      r
03     27    556      0     13      C
04      0      0    458    138      G
05      0      0      0    596      T
06    206     53    331      6      r
07    309     34      2    251      w
08    168    121    131    176      w
09     94    146    252    104      g
10    227    117    124    128      a
11    301     18     74    203      w
12      8    244    266     78      s
13    596      0      0      0      A
14    418    178      0      0      M
15      8      0    587      1      G
Binding TFs: T17861 (No apical meristem (NAM) protein)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.