DNA Binding Motif

						

			
Accessions: MA0651.2 (JASPAR 2024)

			
Names: HOXC11
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: CAP-SELEX
Length: 12
Consensus: arGTCGTAAAAh
Weblogo: 
PSSM: P0      A      C      G      T
01   8810   1684   2098   2757      a
02   4423    777  10927    776      r
03   1308    631  14042      0      G
04     44    238     58  15350      T
05    199  15350     20      7      C
06    540      0  14810      0      G
07      0      0      0  15350      T
08  12177      0     10   3173      A
09  15350      0      0     32      A
10  15350     22     45     39      A
11  15350    848    467   1044      A
12   5712   3911   1401   4325      h
Type: Heterodimer
Binding TFs: O43248 (Homeobox domain, Protein of unknown function (DUF3528))
O43248
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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