DNA Binding Motif
| Accessions: | 6gat_A (3D-footprint 20231221) |
| Names: | NITROGEN REGULATORY PROTEIN AREA |
| Organisms: | Emericella nidulans, Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | SOLUTION NMR STRUCTURE OF THE L22V MUTANT DNA BINDING DOMAIN OF AREA COMPLEXED TO A 13 BP DNA CONTAINING A TGATA SITE, REGULARIZED MEAN STRUCTURE |
| Length: | 6 |
| Consensus: | TGATnG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 0 96 T 02 0 0 96 0 G 03 67 9 11 9 A 04 11 9 9 67 T 05 24 24 24 24 n 06 9 11 67 9 G |
| Binding TFs: | 6gat_A (GATA zinc finger) |
| Binding Sites: | 6gat_B 6gat_C |
| Publications: | Starich M.R, Wikström M, Schumacher S, Arst H.N, Gronenborn A.M, Clore G.M. The solution structure of the Leu22-->Val mutant AREA DNA binding domain complexed with a TGATAG core element defines a role for hydrophobic packing in the determination of specificity. Journal of molecular biology 277:621-34 (1998). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.