DNA Binding Motif

						

			
Accessions: Msx3_DBD_1 (HumanTF 1.0)

			
Names: Msx3
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 18
Consensus: syAATTAaawwsCAATTA
Weblogo: 
PSSM: P0      A      C      G      T
01    113    238    344    104      s
02     34    517     19    221      y
03    603     55     48     25      A
04    617     34     11      3      A
05      0      1      2    802      T
06     44     68      8    753      T
07    605      8     52     16      A
08    533    132    175    184      a
09    541    215    197    191      a
10    509    137    198    336      w
11    333     71    113    203      w
12     94    341    313     61      s
13     47    588     17    138      C
14    639     35     81      9      A
15    657     18      6      8      A
16      1      0      0    774      T
17     15     33      4    769      T
18    661      6     50     22      A
Binding TFs: Msx3_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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