DNA Binding Motif
| Accessions: | MA1618.1 (JASPAR 2024) |
| Names: | Ptf1a |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 13 |
| Consensus: | dmaCAGATGttkh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 4092 2989 3661 3699 d 02 4476 3662 3568 2735 m 03 8554 2747 2414 726 a 04 133 14006 130 172 C 05 14064 118 153 106 A 06 250 466 13072 653 G 07 12132 1724 437 148 A 08 126 224 118 13973 T 09 241 122 13868 210 G 10 965 2058 2854 8564 t 11 1511 2341 2295 8294 t 12 3491 3601 3664 3685 k 13 3754 3689 3376 3622 h |
| Type: | Heterodimer |
| Binding TFs: | Q9QX98 (Helix-loop-helix DNA-binding domain) Q9QX98 |
| Binding Sites: | MA1618.1.1 MA1618.1.10 MA1618.1.11 MA1618.1.12 MA1618.1.13 MA1618.1.14 MA1618.1.15 MA1618.1.16 MA1618.1.17 MA1618.1.18 MA1618.1.19 MA1618.1.2 MA1618.1.20 MA1618.1.3 MA1618.1.4 MA1618.1.5 MA1618.1.6 MA1618.1.7 MA1618.1.8 MA1618.1.9 |
| Publications: | Meredith DM, Borromeo MD, Deering TG, Casey BH, Savage TK, Mayer PR, Hoang C, Tung KC, Kumar M, Shen C, Swift GH, Macdonald RJ, Johnson JE. Program specificity for Ptf1a in pancreas versus neural tube development correlates with distinct collaborating cofactors and chromatin accessibility. Mol Cell Biol 33:3166-79 (2013). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.