DNA Binding Motif
| Accessions: | UP00353A_1 (UniPROBE 20160601) |
| Names: | Fkh1, Fork head protein homolog 1, YIL131C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | yrwwwtGTAAACAAarrrgr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.18 0.29 0.21 0.33 y 02 0.25 0.19 0.33 0.23 r 03 0.52 0.08 0.10 0.30 w 04 0.53 0.08 0.13 0.27 w 05 0.37 0.07 0.15 0.41 w 06 0.12 0.15 0.13 0.60 t 07 0.15 0 0.85 0 G 08 0.01 0 0 0.99 T 09 0.96 0.04 0 0 A 10 0.98 0.01 0 0.01 A 11 0.99 0 0 0.01 A 12 0 0.93 0 0.07 C 13 0.99 0 0 0 A 14 0.87 0.04 0.02 0.07 A 15 0.67 0.05 0.07 0.21 a 16 0.25 0.19 0.41 0.15 r 17 0.37 0.16 0.30 0.17 r 18 0.28 0.18 0.33 0.20 r 19 0.21 0.12 0.45 0.23 g 20 0.42 0.19 0.25 0.14 r |
| Binding TFs: | UP00353A (Fork head domain, FHA domain) |
| Binding Sites: | GTAAACAA AATAAACA AGTAAACA ATAAACAA ATAAACAC ATAAACAT ATGTTTAC ATTGTTTA CGTAAACA CTGTTTAC GATAAACA GGTAAACA GTAAACAC GTAAATAA GTTGTTTA TAAACAAA TAAATAAA TATAAACA TATTTACA TGTAAACA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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