DNA Binding Motif

						

			
Accessions: 6uep_B (3D-footprint 20231221)

			
Names: TATA-box-binding protein 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of A. thaliana TBP bound to a DNA site with a C-C mismatch
Length: 8
Consensus: cCtTTATA
Weblogo: 
PSSM: P0      A      C      G      T
01     13     54     13     16      c
02      0     96      0      0      C
03     16     13     13     54      t
04      0      0      0     96      T
05      0      0      0     96      T
06     96      0      0      0      A
07      0      0      0     96      T
08     96      0      0      0      A
Binding TFs: 6uep_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 6uep_E
6uep_F
			
Publications: Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordân R. DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature 587:291-296 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.