DNA Binding Motif

						

			
Accessions: 5trd_AB (3D-footprint 20231221)

			
Names: Riboflavin kinase
Organisms: strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165, Thermoplasma acidophilum
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator
Length: 15
Consensus: ACTcnnnnnntAGTA
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0     96      0      0      C
03      0      6      1     89      T
04     12     64      8     12      c
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     12     14      6     64      t
12     89      1      6      0      A
13      0      0     96      0      G
14      0      0      0     96      T
15     70      6      8     12      A
Type: Heterodimer
Binding TFs: 5trd_A (MarR family, Domain of unknown function DUF120, Winged helix DNA-binding domain)
5trd_B (MarR family, Domain of unknown function DUF120, Winged helix DNA-binding domain)
Binding Sites: 5trd_G
5trd_H
			
	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.