DNA Binding Motif

						

			
Accessions: 4hca_A (3D-footprint 20231221)

			
Names: Trans-acting T-cell-specific transcription factor GATA-3
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: DNA binding by GATA transcription factor-complex 1
Length: 9
Consensus: tTCTGATAa
Weblogo: 
PSSM: P0      A      C      G      T
01      8     19      8     61      t
02      8      8      8     72      T
03      0     96      0      0      C
04      0      0      0     96      T
05      0      0     96      0      G
06     96      0      0      0      A
07      0      0      0     96      T
08     96      0      0      0      A
09     61     17     10      8      a
Binding TFs: 4hca_A (GATA zinc finger)
Binding Sites: 4hca_X
4hca_Y
			
Publications: Chen Y, Bates D.L, Dey R, Chen P.H, Machado A.C, Laird-Offringa I.A, Rohs R, Chen L. DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation. Cell reports 2:1197-206 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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