DNA Binding Motif

						

			
Accessions: MA2398.1 (JASPAR 2024)

			
Names: AS2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 18
Consensus: CGsCGgmrrwkrCGGcGg
Weblogo: 
PSSM: P0      A      C      G      T
01     82    726     18    173      C
02     88     36    797     77      G
03     36    302    653      6      s
04     50    936      2     11      C
05     20      0    927     52      G
06    157     41    678    123      g
07    476    250    125    148      m
08    378     22    437    161      r
09    430     50    353    166      r
10    410    232     36    321      w
11    220    118    371    289      k
12    287    116    530     66      r
13    123    813      0     63      C
14      4      4    986      4      G
15      0    148    847      4      G
16    225    626     31    116      c
17     77     22    824     75      G
18    236     41    619    102      g
Binding TFs: O04479
			
Publications: Husbands A, Bell EM, Shuai B, Smith HM, Springer PS. LATERAL ORGAN BOUNDARIES defines a new family of DNA-binding transcription factors and can interact with specific bHLH proteins. Nucleic Acids Res : (2007;35(19):6663-71.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.