DNA Binding Motif

						

			
Accessions: RARG_methyl_1 (HT-SELEX2 May2017)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: rrGGTCAaaRGGTCRw
Weblogo: 
PSSM: P0      A      C      G      T
01    394    155    520    177      r
02    770    106    476     27      r
03     12      0   1246     34      G
04      2      2   1246    260      G
05     83     46    217   1246      T
06     10   1246    166     87      C
07   1246      6    227      6      A
08   1246    134    265    233      a
09   1246     45    380    262      a
10   1246     50    511     19      R
11      5      0   1246      4      G
12      0      1   1246    350      G
13     44     28    160   1246      T
14      5   1246     97    179      C
15   1246      3    546     11      R
16    321    287    296    342      w
Binding TFs: RARG (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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