DNA Binding Motif

						

			
Accessions: 6jnn_AN (3D-footprint 20231221)

			
Names: Lysine-specific demethylase REF6
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: REF6 ZnF2-4-NAC004-mC1 complex
Length: 16
Consensus: AywGAknnnnTCTGTA
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0     41      0     55      y
03     46     10     10     30      w
04      5      0     90      1      G
05     96      0      0      0      A
06     10     13     43     30      k
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      0      0      0     96      T
12      8     76      2     10      C
13      0      0      0     96      T
14      0      0     96      0      G
15      0      0      0     96      T
16     74      0      1     21      A
Binding TFs: 6jnn_A / 6jnn_N (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 6jnn_H
6jnn_I
			
Publications: Qiu Q, Mei H, Deng X, He K, Wu B, Yao Q, Zhang J, Lu F, Ma J, Cao X. DNA methylation repels targeting of Arabidopsis REF6. Nat Commun 10:2063 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.