DNA Binding Motif

						

			
Accessions: MA1678.1 (JASPAR 2024)

			
Names: NTL8
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 24
Consensus: rrTTwCTTcaysgtgAAGwAAchw
Weblogo: 
PSSM: P0      A      C      G      T
01    241    143    307    228      r
02    238    157    336    188      r
03     66     21     27    805      T
04    136      7     41    735      T
05    418    120    134    247      w
06      4    913      1      1      C
07      2     38     14    865      T
08      3      3      1    912      T
09    109    526    209     75      c
10    500    131    115    173      a
11    227    269    186    237      y
12    218    246    238    217      s
13    225    190    281    223      g
14    166    111    121    521      t
15     70    203    528    118      g
16    907      3      3      6      A
17    857     17     43      2      A
18      0      1    913      5      G
19    280    146     98    395      w
20    792     24      2    101      A
21    840     19     15     45      A
22    104    586    100    129      c
23    240    306    113    260      h
24    230    129    154    406      w
Type: Heterodimer
Binding TFs: Q9XIN7 (No apical meristem (NAM) protein)
Q9XIN7
Binding Sites: MA1678.1.11
MA1678.1.12
MA1678.1.1
MA1678.1.10
MA1678.1.13
MA1678.1.14
MA1678.1.15
MA1678.1.16
MA1678.1.17
MA1678.1.18
MA1678.1.19
MA1678.1.2
MA1678.1.20
MA1678.1.3
MA1678.1.4
MA1678.1.5
MA1678.1.6
MA1678.1.7
MA1678.1.8
MA1678.1.9
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.