DNA Binding Motif

						

			
Accessions: 1tf3_A (3D-footprint 20231221)

			
Names: TRANSCRIPTION FACTOR IIIA
Organisms: Xenopus laevis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES
Length: 12
Consensus: TGkATGGGAGAm
Weblogo: 
PSSM: P0      A      C      G      T
01      3     11     10     72      T
02      0      0     96      0      G
03      0      5     65     26      k
04     96      0      0      0      A
05      0      0      0     96      T
06      0      0     96      0      G
07      0      0     96      0      G
08      0      0     96      0      G
09     75      3     11      7      A
10      0      0     96      0      G
11     72      7      3     14      A
12     30     53      3     10      m
Binding TFs: 1tf3_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1tf3_E
1tf3_F
			
Publications: Foster M.P, Wuttke D.S, Radhakrishnan I, Case D.A, Gottesfeld J.M, Wright P.E. Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Nature structural biology 4:605-8 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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