DNA Binding Motif

						

			
Accessions: HNF4A_methyl_1 (HT-SELEX2 May2017)

			
Names: HNF4A
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 15
Consensus: rrGGTCAAAGGTCRw
Weblogo: 
PSSM: P0      A      C      G      T
01   2834    540   4871    554      r
02   3388     49   5411     17      r
03     11     11   8799     19      G
04    124      5   8799    699      G
05    101     96   1996   8799      T
06     10   8799     32    308      C
07   8799      2    571      3      A
08   8799      3     18     19      A
09   8799     11    113      5      A
10      5      1   8799      1      G
11     21      2   8799    612      G
12      4     15    201   8799      T
13      3   8799     65    468      C
14   8799     47   4017     78      R
15   2602   2111   1783   2303      w
Binding TFs: HNF4A (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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