DNA Binding Motif
| Accessions: | MA0281.3 (JASPAR 2024) |
| Names: | CBF1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-exo |
| Length: | 10 |
| Consensus: | rtCACGTGAy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 137 14 73 32 r 02 12 20 55 169 t 03 1 254 1 0 C 04 253 0 2 1 A 05 1 243 2 10 C 06 7 0 249 0 G 07 0 0 0 256 T 08 0 1 255 0 G 09 215 24 11 6 A 10 17 146 9 84 y |
| Type: | Heterodimer |
| Binding TFs: | P17106 (Helix-loop-helix DNA-binding domain) P17106 |
| Binding Sites: | MA0281.3.11 / MA0281.3.13 / MA0281.3.7 / MA0281.3.8 MA0281.3.10 / MA0281.3.12 / MA0281.3.6 / MA0281.3.9 MA0281.3.1 / MA0281.3.2 MA0281.3.14 / MA0281.3.15 MA0281.3.16 MA0281.3.17 MA0281.3.18 MA0281.3.19 MA0281.3.20 MA0281.3.3 MA0281.3.4 MA0281.3.5 |
| Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
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