DNA Binding Motif

						

			
Accessions: MA1911.2 (JASPAR 2024)

			
Names: Rel
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 10
Consensus: gGGAATTycc
Weblogo: 
PSSM: P0      A      C      G      T
01     71    184    556    189      g
02      8      6    977      9      G
03    115      6    845     35      G
04    832      7    118     43      A
05    859     21     22     98      A
06    185     11     15    789      T
07     14     22      8    956      T
08     92    323     38    547      y
09     69    669     46    217      c
10    103    629    139    130      c
Type: Heterodimer
Binding TFs: Q4H2V9 (Rel homology domain (RHD))
Q4H2V9
			
Publications: Arizza V, Bonura A, La Paglia L, Urso A, Pinsino A, Vizzini A. Transcriptional and in silico analyses of MIF cytokine and TLR signalling interplay in the LPS inflammatory response of Ciona robusta. Sci Rep 10:11339 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.