DNA Binding Motif
| Accessions: | UP00514A_1 (UniPROBE 20160601) |
| Names: | AMAG_02766 |
| Organisms: | Allomyces macrogynus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | dytwtwwGTAAACAAAvrkrww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.33 0.11 0.26 0.30 d 02 0.23 0.27 0.11 0.39 y 03 0.23 0.19 0.20 0.38 t 04 0.29 0.13 0.24 0.35 w 05 0.22 0.18 0.13 0.48 t 06 0.29 0.08 0.08 0.55 w 07 0.30 0.17 0.10 0.43 w 08 0.22 0.01 0.77 0 G 09 0.01 0.01 0 0.97 T 10 0.95 0.04 0 0 A 11 0.89 0.10 0 0.01 A 12 0.99 0 0 0.01 A 13 0 0.92 0 0.07 C 14 0.99 0 0 0.01 A 15 0.79 0.06 0.03 0.13 A 16 0.72 0.05 0.10 0.13 A 17 0.28 0.31 0.25 0.16 v 18 0.31 0.14 0.33 0.22 r 19 0.08 0.14 0.44 0.34 k 20 0.36 0.15 0.29 0.20 r 21 0.31 0.16 0.20 0.32 w 22 0.37 0.22 0.16 0.25 w |
| Binding TFs: | UP00514A (Fork head domain) |
| Binding Sites: | GTAAACAA AATAAACA AGTAAACA ATAAACAA ATAAACAT ATGTTTAC ATTGTTTA CATAAACA CGTAAACA CTGTTTAC GATAAACA GGTAAACA GTAAACAC GTAAATAA GTACACAA GTTGTTTA TAAACAAA TACACAAA TGTAAACA ATACACAA |
| Publications: | Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed] |
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