DNA Binding Motif

						

			
Accessions: MA1679.1 (JASPAR 2024)

			
Names: RAP2-1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: cdyCACCGACAhtdh
Weblogo: 
PSSM: P0      A      C      G      T
01    216    345    123    215      c
02    266    114    272    247      d
03     98    389    186    226      y
04     46    810     17     26      C
05    810      2     78      9      A
06      4    890      3      2      C
07      5    890      0      4      C
08      5      2    890      2      G
09    738    106     10     45      A
10      2    892      1      4      C
11    739     67     44     49      A
12    229    237     71    362      h
13    214    221    121    343      t
14    254    137    239    269      d
15    236    265    154    244      h
Type: Heterodimer
Binding TFs: Q8LC30 (AP2 domain)
Q8LC30
Binding Sites: MA1679.1.2
MA1679.1.3
MA1679.1.1
MA1679.1.10 / MA1679.1.6
MA1679.1.11 / MA1679.1.7
MA1679.1.12 / MA1679.1.8
MA1679.1.13
MA1679.1.14
MA1679.1.15 / MA1679.1.9
MA1679.1.10 / MA1679.1.16
MA1679.1.11 / MA1679.1.17
MA1679.1.12 / MA1679.1.18
MA1679.1.13 / MA1679.1.19
MA1679.1.14 / MA1679.1.20
MA1679.1.3 / MA1679.1.4
MA1679.1.4 / MA1679.1.5
MA1679.1.5 / MA1679.1.6
MA1679.1.7
MA1679.1.8
MA1679.1.9
MA1679.1.15
MA1679.1.16
MA1679.1.17
MA1679.1.18
MA1679.1.19
MA1679.1.20
			
Publications: Dong CJ, Liu JY. The Arabidopsis EAR-motif-containing protein RAP2. 1 functions as an active transcriptional repressor to keep stress responses under tight control : (BMC). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.