DNA Binding Motif

Accessions: 6pw2_B (3D-footprint 20231221)
Names: Epstein-Barr nuclear antigen 1
Organisms: Epstein-Barr virus (strain B95-8) (HHV-4), Human herpesvirus 4
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication
Length: 7
Consensus: GATAGca
Weblogo:
PSSM: P0 A C G T
01 0 0 96 0 G
02 96 0 0 0 A
03 0 0 0 96 T
04 96 0 0 0 A
05 0 0 96 0 G
06 10 55 21 10 c
07 42 21 10 23 a
Binding TFs: 6pw2_B (Epstein Barr virus nuclear antigen-1, DNA-binding domain)
Binding Sites: 6pw2_E
6pw2_F
Publications: Malecka KA, Dheekollu J, Deakyne JS, Wiedmer A, Ramirez UD, Lieberman PM, Messick TE. Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication. J Virol : (2019). [Pubmed]

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