DNA Binding Motif

						

			
Accessions: 6pw2_B (3D-footprint 20231221)

			
Names: Epstein-Barr nuclear antigen 1
Organisms: Epstein-Barr virus (strain B95-8) (HHV-4), Human herpesvirus 4
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication
Length: 7
Consensus: GATAGca
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02     96      0      0      0      A
03      0      0      0     96      T
04     96      0      0      0      A
05      0      0     96      0      G
06     10     55     21     10      c
07     42     21     10     23      a
Binding TFs: 6pw2_B (Epstein Barr virus nuclear antigen-1, DNA-binding domain)
Binding Sites: 6pw2_E
6pw2_F
			
Publications: Malecka KA, Dheekollu J, Deakyne JS, Wiedmer A, Ramirez UD, Lieberman PM, Messick TE. Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication. J Virol : (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.