DNA Binding Motif

						

			
Accessions: UP00309A_1 (UniPROBE 20160601)

			
Names: Cbf1, CBP-1, Centromere promoter factor 1, Centromere-binding factor 1, Centromere-binding protein 1, CEP1, CP1, CPF1, J1730, YJR060W
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: kaycwgkCACGTGactbvymg
Weblogo: 
PSSM: P0      A      C      G      T
01   0.10   0.15   0.48   0.27      k
02   0.45   0.16   0.15   0.23      a
03   0.22   0.25   0.18   0.35      y
04   0.18   0.49   0.13   0.20      c
05   0.34   0.24   0.15   0.27      w
06   0.16   0.10   0.56   0.17      g
07   0.13   0.18   0.30   0.39      k
08   0.03   0.96      0      0      C
09   0.97   0.01   0.01   0.01      A
10      0   0.92   0.01   0.06      C
11   0.06   0.01   0.92      0      G
12   0.01   0.01   0.01   0.97      T
13      0      0   0.96   0.03      G
14   0.47   0.24   0.14   0.15      a
15   0.17   0.56   0.10   0.16      c
16   0.19   0.23   0.10   0.47      t
17   0.19   0.25   0.31   0.25      b
18   0.29   0.28   0.28   0.14      v
19   0.22   0.25   0.13   0.39      y
20   0.31   0.38   0.14   0.18      m
21   0.23   0.20   0.38   0.19      g
Binding TFs: UP00309A (Helix-loop-helix DNA-binding domain)
Binding Sites: AACACGTG
ACACGTGA
ACACGTGC
ACACGTGT
ACCACGTG
ATCACGTG
CACGTGAC
CACGTGAG
CACGTGCA
CACGTGCC
CACGTGCG
CACGTGGA
CACGTGGC
CACGTGTA
CACGTGTC
CCACGTGA
CCACGTGC
CCACGTGG
GCACGTGC
TCACGTGA
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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