DNA Binding Motif

						

			
Accessions: 1tf6_A (3D-footprint 20231221)

			
Names: PROTEIN (TRANSCRIPTION FACTOR IIIA)
Organisms: Xenopus laevis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION
Length: 24
Consensus: TGGTnannnnnnkGATGGGAAACC
Weblogo: 
PSSM: P0      A      C      G      T
01      3      3      3     87      T
02      0      0     96      0      G
03      0      0     96      0      G
04      0      0      0     96      T
05     24     24     24     24      n
06     61      6      9     20      a
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13      3      6     26     61      k
14      0      0     96      0      G
15     96      0      0      0      A
16      0      0      0     96      T
17      0      0     96      0      G
18      0      0     96      0      G
19      0      0     96      0      G
20     96      0      0      0      A
21     78      3     15      0      A
22     69      6      9     12      A
23      0     96      0      0      C
24      3     81      6      6      C
Binding TFs: 1tf6_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1tf6_B
1tf6_C
			
Publications: Nolte R.T, Conlin R.M, Harrison S.C, Brown R.S. Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex. Proceedings of the National Academy of Sciences of the United States of America 95:2938-43 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.