DNA Binding Motif

						

			
Accessions: 5ke6_A (3D-footprint 20231221)

			
Names: Krueppel-like factor 4
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: mouse Klf4 ZnF1-3 and TpG/CpA sequence DNA complex structure
Length: 10
Consensus: gAGGTGTGgC
Weblogo: 
PSSM: P0      A      C      G      T
01     16     13     54     13      g
02     96      0      0      0      A
03      0      0     96      0      G
04      0      0     96      0      G
05      0      0      0     96      T
06      0      0     96      0      G
07      0      0      0     96      T
08      0      0     96      0      G
09     13     13     57     13      g
10      0     96      0      0      C
Binding TFs: 5ke6_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 5ke6_B
5ke6_C
			
Publications: Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X. Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res 44:10177-10185 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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