DNA Binding Motif

						

			
Accessions: M0434 (AthalianaCistrome v4_May2016)

			
Names: PDF2.DAP, T19480;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: aaarGAATATTCsaw
Weblogo: 
PSSM: P0      A      C      G      T
01    284     80     99    137      a
02    395     66     80     59      a
03    331     70    113     86      a
04    333     46    190     31      r
05     50      4    530     16      G
06    499     40     13     48      A
07    596      1      0      3      A
08      0      0     70    530      T
09    595      1      0      4      A
10      0      1      3    596      T
11     54      9     31    506      T
12      3    594      1      2      C
13      2    287    164    147      s
14    256    110    107    127      a
15    306     76     50    168      w
Binding TFs: T19480 (Homeobox domain, START domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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