DNA Binding Motif

						

			
Accessions: MSX2_DBD_1 (HumanTF 1.0)

			
Names: MSX2
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 18
Consensus: gCAATTAaawwsCAATTA
Weblogo: 
PSSM: P0      A      C      G      T
01    150    321    741    255      g
02     36    813     13    235      C
03   1090     51     36     40      A
04   1108     34     16      4      A
05      0      1      0   1597      T
06    103    102      4   1473      T
07   1145      6     33     26      A
08   1013    114    187    302      a
09   1000    229    195    192      a
10    912    153    219    618      w
11    657     89    191    364      w
12    180    517    465     89      s
13     82    779     15    260      C
14   1086     54    169      9      A
15   1091     63      9      1      A
16      2      1      0   1495      T
17     14     45      2   1472      T
18   1159      6     67     39      A
Binding TFs: MSX2_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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