DNA Binding Motif
| Accessions: | MA1341.1 (JASPAR 2024), M0196 (AthalianaCistrome v4_May2016) |
| Names: | bZIP53, bZIP53.DAP, T11942; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | dwwGmTGACGTGGCa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 178 67 185 168 d 02 241 73 105 179 w 03 152 37 63 346 w 04 20 1 503 74 G 05 159 387 50 2 m 06 0 26 0 572 T 07 0 14 529 55 G 08 598 0 0 0 A 09 0 595 1 2 C 10 1 2 595 0 G 11 0 0 0 598 T 12 0 22 576 0 G 13 24 0 450 124 G 14 138 430 14 16 C 15 348 100 81 69 a |
| Type: | Heterodimer |
| Binding TFs: | Q9LZP8 / T11942 (bZIP transcription factor, Basic region leucine zipper) Q9LZP8 |
| Binding Sites: | MA1341.1.1 MA1341.1.18 MA1341.1.15 MA1341.1.12 / MA1341.1.17 MA1341.1.13 MA1341.1.19 MA1341.1.14 MA1341.1.20 MA1341.1.3 MA1341.1.4 MA1341.1.6 MA1341.1.2 / MA1341.1.5 MA1341.1.8 MA1341.1.7 MA1341.1.9 MA1341.1.16 MA1341.1.11 MA1341.1.10 |
| Publications: | Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed] O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.