DNA Binding Motif

						

			
Accessions: PPARG_MOUSE.H10MO.A|M01303 (HOCOMOCO 10)

			
Names: Pparg
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Thyroid hormone receptor-related factors (NR1){2.1.2}; PPAR (NR1C){2.1.2.5}
Length: 17
Consensus: awstrGGkcArAGGkcA
Weblogo: 
PSSM: P0      A      C      G      T
01    289     70     53     88      a
02    289     19     47    145      w
03     57    186    188     69      s
04     78     65     52    305      t
05    215     12    243     30      r
06     67      1    364     68      G
07     58     11    405     26      G
08     80     73    193    154      k
09     40    279    116     65      c
10    473     10      6     11      A
11    294     18    172     16      r
12    423      4     68      5      A
13     79      3    400     18      G
14     27      3    416     54      G
15     21     55    140    284      k
16     40    254     91    115      c
17    355     41     52     52      A
Binding TFs: PPARG_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), PPAR gamma N-terminal region)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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