DNA Binding Motif
| Accessions: | sna (DrosophilaTF 1.1) |
| Names: | sna |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 13 |
| Consensus: | vwrACAGGTGymc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.3182 0.2727 0.3182 0.0909 v 02 0.36 0.2 0.16 0.28 w 03 0.4483 0.069 0.4483 0.0345 r 04 0.7105 0 0.2105 0.0789 A 05 0 0.975 0.025 0 C 06 0.975 0 0 0.025 A 07 0.075 0 0.925 0 G 08 0.05 0 0.95 0 G 09 0 0 0 1 T 10 0 0 0.925 0.075 G 11 0.0811 0.5135 0.0811 0.3243 y 12 0.5625 0.25 0.0625 0.125 m 13 0.2333 0.3667 0.2333 0.1667 c |
| Binding TFs: | sna (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger) |
| Binding Sites: | sna_1 sna_10 sna_11 sna_12 sna_13 sna_14 sna_15 sna_16 sna_17 sna_18 sna_19 sna_2 sna_20 sna_21 sna_22 sna_23 sna_24 sna_25 sna_26 sna_27 sna_28 sna_29 sna_3 sna_30 sna_31 sna_32 sna_33 sna_34 sna_35 sna_36 sna_37 sna_38 sna_39 sna_4 sna_40 sna_5 sna_6 sna_7 sna_8 sna_9 |
| Publications: | Mauhin V., Lutz Y., Dennefeld C., Alberga A. Definition of the DNA-binding site repertoire for the Drosophila transcription factor SNAIL. Nucleic Acids Res. 21:3951-3957 (1993). [Pubmed] |
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