DNA Binding Motif

						

			
Accessions: MA2375.1 (JASPAR 2024)

			
Names: BMY2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 11
Consensus: srCACGTGTGr
Weblogo: 
PSSM: P0      A      C      G      T
01     45    413    401    140      s
02    525     20    406     48      r
03      3    975      0     21      C
04    983      0     16      0      A
05      0   1000      0      0      C
06      0      0    996      3      G
07      0      1      0    998      T
08      1      0    998      0      G
09     11    231     61    695      T
10     66     70    831     31      G
11    591      8    343     56      r
Type: Heterodimer
Binding TFs: Q9FH80 (Glycosyl hydrolase family 14, Plant protein of unknown function (DUF822))
Q9FH80
			
Publications: Yu X, Li L, Zola J, Aluru M, Ye H, Foudree A, Guo H, Anderson S, Aluru S, Liu P, Rodermel S, Yin Y. A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana. Plant J 65:634-46 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.