DNA Binding Motif

						

			
Accessions: MA0083.2 (JASPAR 2024)

			
Names: SRF
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 18
Consensus: yatkyCCAwAWAwGGmaa
Weblogo: 
PSSM: P0      A      C      G      T
01    426    813    281    757      y
02   1017    446    331    483      a
03    515    285    206   1271      t
04    270    257   1000    750      k
05    477    681    533    586      y
06     49   2144      0     84      C
07      0   2105      0    172      C
08   1767     66     23    421      A
09   1184      0     73   1020      w
10   2226      0     16     35      A
11    590    120     16   1551      W
12   2048     12     51    166      A
13   1452     10     87    728      w
14     68      0   2209      0      G
15     15      7   2255      0      G
16    608    864    441    364      m
17   1353    504    230    190      a
18   1299    178    460    340      a
Type: Heterodimer
Binding TFs: P11831 (SRF-type transcription factor (DNA-binding and dimerisation domain))
P11831
Binding Sites: MA0083.2.1
MA0083.2.10 / MA0083.2.18
MA0083.2.11
MA0083.2.12
MA0083.2.13
MA0083.2.14
MA0083.2.15
MA0083.2.16
MA0083.2.17 / MA0083.2.19
MA0083.2.2
MA0083.2.20
MA0083.2.3
MA0083.2.4
MA0083.2.5
MA0083.2.6
MA0083.2.7
MA0083.2.8
MA0083.2.9
			
Publications: Pollock R., Treisman R. A sensitive method for the determination of protein-DNA binding specificities. Nucleic Acids Res. 18:6197-6204 (1990). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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