DNA Binding Motif

						

			
Accessions: MA2005.2 (JASPAR 2024)

			
Names: NAC016
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: tvCkTGtkcysCAmG
Weblogo: 
PSSM: P0      A      C      G      T
01 192.63  1.675    211 594.64      t
02    298    273    337 92.127      v
03 30.151    966      0   3.35      C
04      0      0    466    534      k
05      0      0      0   1000      T
06 35.176 85.427    874  5.025      G
07    233    201    146    420      t
08    109    218    271 402.01      k
09    226    472    152    149      c
10 182.58    256    134    427      y
11 185.93    303    312 199.33      s
12      0    968      0 31.826      C
13   1000      0      0      0      A
14    563    437      0      0      m
15  1.675      0    998      0      G
Type: Heterodimer
Binding TFs: A4FVP6 (No apical meristem (NAM) protein)
A4FVP6
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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