DNA Binding Motif
| Accessions: | 4pu4_ABCD (3D-footprint 20231221) |
| Names: | Toxin-antitoxin system antidote transcriptional repressor Xre family |
| Organisms: | Shewanella oneidensis, strain MR-1 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its operator DNA complex (space group P21) |
| Length: | 14 |
| Consensus: | AGGGTTnnnTnnnT |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 73 7 9 7 A 02 0 0 96 0 G 03 9 7 73 7 G 04 0 0 96 0 G 05 7 7 7 75 T 06 0 0 0 96 T 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 9 7 7 73 T 11 24 24 24 24 n 12 24 24 24 24 n 13 24 24 24 24 n 14 0 0 0 96 T |
| Type: | Heterodimer |
| Binding TFs: | 4pu4_C (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain) 4pu4_D (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain) |
| Binding Sites: | 4pu4_P 4pu4_Q |
| Publications: | Wen Y, Behiels E, Felix J, Elegheert J, Vergauwen B, Devreese B, Savvides S.N. The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence. Nucleic acids research 42:10134-47 (2014). [Pubmed] |
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