DNA Binding Motif

						

			
Accessions: Otx1_DBD_1 (HumanTF 1.0)

			
Names: Otx1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 15
Consensus: kwTAATCCGATTAdc
Weblogo: 
PSSM: P0      A      C      G      T
01    123    129    168    160      k
02    153    142     77    208      w
03     40     16      0    580      T
04    580      0     20     17      A
05    580      0      1      0      A
06     10      5    117    580      T
07      6    580     50      0      C
08     20    580      0     14      C
09      4     11    580     69      G
10    580    195     12     34      A
11      6      6      1    580      T
12     30      8      0    580      T
13    580      7     21     51      A
14    194     90    149    147      d
15    142    192    137    109      c
Binding TFs: Otx1_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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