DNA Binding Motif
| Accessions: | MA1681.1 (JASPAR 2024) |
| Names: | SRM1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 14 |
| Consensus: | wwwaGATAAGrtww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 1356 254 290 1250 w 02 1153 375 709 913 w 03 1274 358 443 1075 w 04 2050 135 631 334 a 05 11 4 3125 10 G 06 3062 44 19 25 A 07 20 10 13 3107 T 08 3017 21 25 87 A 09 3005 27 41 77 A 10 90 128 2774 158 G 11 913 246 1692 299 r 12 743 264 234 1909 t 13 958 357 390 1445 w 14 1245 392 543 970 w |
| Type: | Heterodimer |
| Binding TFs: | Q9FNN6 (Myb-like DNA-binding domain) Q9FNN6 |
| Binding Sites: | MA1681.1.1 MA1681.1.10 MA1681.1.11 / MA1681.1.9 MA1681.1.10 / MA1681.1.12 MA1681.1.13 MA1681.1.11 / MA1681.1.14 MA1681.1.15 MA1681.1.12 / MA1681.1.16 MA1681.1.17 MA1681.1.13 / MA1681.1.18 MA1681.1.14 / MA1681.1.19 MA1681.1.1 / MA1681.1.2 MA1681.1.15 / MA1681.1.20 MA1681.1.2 / MA1681.1.3 MA1681.1.3 / MA1681.1.4 MA1681.1.4 / MA1681.1.5 MA1681.1.5 / MA1681.1.6 MA1681.1.6 / MA1681.1.7 MA1681.1.7 / MA1681.1.8 MA1681.1.8 / MA1681.1.9 MA1681.1.16 MA1681.1.17 MA1681.1.18 MA1681.1.19 MA1681.1.20 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.