DNA Binding Motif

						

			
Accessions: MA1832.1 (JASPAR 2024)

			
Names: Zm00001d002364
Organisms: Zea mays
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 11
Consensus: ccGCCGCCGcc
Weblogo: 
PSSM: P0      A      C      G      T
01   2288   9863   4044   2895      c
02   1747  11808   3334   2201      c
03   1536   2981  13670    903      G
04      0  19090      0      0      C
05      0  19090      0      0      C
06      0      0  19090      0      G
07      0  19090      0      0      C
08      0  19090      0      0      C
09      0      0  19090      0      G
10   1785  11009   3546   2750      c
11   1941  11352   3763   2034      c
Type: Heterodimer
Binding TFs: C4J4G2 (AP2 domain)
C4J4G2
Binding Sites: MA1832.1.1
MA1832.1.10 / MA1832.1.11 / MA1832.1.17 / MA1832.1.18 / MA1832.1.19 / MA1832.1.20 / MA1832.1.5 / MA1832.1.6 / MA1832.1.7
MA1832.1.12
MA1832.1.13
MA1832.1.14
MA1832.1.15
MA1832.1.16
MA1832.1.2 / MA1832.1.4
MA1832.1.3
MA1832.1.8
MA1832.1.9
			
Publications: Buettner M., Singh K. B. Arabidopsis thaliana ethylene-responsive element binding protein (AtEBP), an ethylene-inducible, GCC box DNA-binding protein interacts with an ocs element binding protein. Proc. Natl. Acad. Sci. USA 94:5961-5966 (1997). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.