DNA Binding Motif
| Accessions: | UP00033A_2 (UniPROBE 20160601) |
| Names: | Another partner for ARF 1, Apa1, D12Ertd748e, MGC38535, Zfp410, zinc finger protein 410, Zinc finger protein APA-1, Znf410 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | yymyyCCkCCCCwhayw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.16 0.28 0.24 0.31 y 02 0.18 0.45 0.07 0.30 y 03 0.30 0.26 0.21 0.23 m 04 0.14 0.43 0.14 0.29 y 05 0.18 0.40 0.16 0.27 y 06 0.07 0.75 0.07 0.11 C 07 0.06 0.72 0.08 0.15 C 08 0.02 0.07 0.65 0.26 k 09 0.17 0.75 0.06 0.02 C 10 0.05 0.78 0.09 0.09 C 11 0.10 0.77 0.07 0.06 C 12 0.06 0.75 0.11 0.07 C 13 0.34 0.07 0.24 0.34 w 14 0.30 0.26 0.17 0.27 h 15 0.48 0.22 0.12 0.18 a 16 0.23 0.28 0.14 0.34 y 17 0.26 0.18 0.17 0.39 w |
| Binding TFs: | UP00033A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | ACATCCCA ACCATCCC AGGGATGG ATATCCCA ATCCCATA ATCCCATG ATGGGATA ATTATGGG CATCCCAA CATCCCAC CATCCCAG CCATCCCA CCCATCCC CTATCCCA GACATCCC GCATCCCA GCCATCCC GGGATGGA GGGATGTA CCATAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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