DNA Binding Motif

						

			
Accessions: 3ufd_AB (3D-footprint 20231221)

			
Names: Regulatory protein
Organisms: Enterobacter sp. RFL1396
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: C.Esp1396I bound to its highest affinity operator site OM
Length: 18
Consensus: TGTCGACTATAGTCTACA
Weblogo: 
PSSM: P0      A      C      G      T
01      4      1      1     90      T
02      0      0     96      0      G
03      1      1      0     94      T
04     14     78      3      1      C
05      0      0     96      0      G
06     87      5      3      1      A
07      0     96      0      0      C
08      7      3      4     82      T
09     93      1      1      1      A
10      4      1      1     90      T
11     90      1      4      1      A
12      0      0     96      0      G
13      1     10     13     72      T
14      0     96      0      0      C
15      1     15      9     71      T
16     94      0      2      0      A
17      0     96      0      0      C
18     90      1      4      1      A
Type: Heterodimer
Binding TFs: 3ufd_A (Helix-turn-helix, Helix-turn-helix domain)
3ufd_B (Helix-turn-helix, Helix-turn-helix domain)
Binding Sites: 3ufd_C
3ufd_D
			
Publications: Ball N.J, McGeehan J.E, Streeter S.D, Thresh S.J, Kneale G.G. The structural basis of differential DNA sequence recognition by restriction-modification controller proteins. Nucleic acids research 40:10532-42 (2012). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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