DNA Binding Motif
| Accessions: | MA0976.2 (JASPAR 2024) |
| Names: | CRF4 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | cCGCCGCCrCcr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 165 1167 247 321 c 02 249 1377 111 163 C 03 89 4 1744 63 G 04 4 1865 22 9 C 05 10 1866 15 9 C 06 113 2 1734 51 G 07 10 1794 9 87 C 08 55 1804 16 25 C 09 1104 12 653 131 r 10 67 1659 40 134 C 11 331 1002 198 369 c 12 612 168 757 363 r |
| Type: | Heterodimer |
| Binding TFs: | Q9SUE3 (AP2 domain) Q9SUE3 |
| Binding Sites: | MA0976.2.1 MA0976.2.10 / MA0976.2.6 MA0976.2.11 / MA0976.2.7 MA0976.2.12 / MA0976.2.9 MA0976.2.13 MA0976.2.14 MA0976.2.11 / MA0976.2.15 MA0976.2.12 / MA0976.2.13 / MA0976.2.16 / MA0976.2.19 MA0976.2.17 MA0976.2.18 MA0976.2.2 MA0976.2.20 MA0976.2.3 MA0976.2.4 MA0976.2.3 / MA0976.2.5 MA0976.2.6 MA0976.2.4 / MA0976.2.7 MA0976.2.5 / MA0976.2.8 MA0976.2.9 MA0976.2.10 MA0976.2.14 MA0976.2.15 MA0976.2.16 MA0976.2.17 MA0976.2.18 MA0976.2.19 MA0976.2.20 MA0976.2.8 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.