DNA Binding Motif

						

			
Accessions: M0389 (AthalianaCistrome v4_May2016)

			
Names: AT2G20400.ampDAP, T10638;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 15
Consensus: aarGAATATTCbrww
Weblogo: 
PSSM: P0      A      C      G      T
01    354     52    121     51      a
02    316     38    136     88      a
03    288     41    227     22      r
04      0      0    571      7      G
05    465     56      8     49      A
06    578      0      0      0      A
07      0      0     12    566      T
08    578      0      0      0      A
09      0      0      0    578      T
10     35     33     35    475      T
11      0    578      0      0      C
12     12    210    187    169      b
13    197    107    147    127      r
14    271     46     63    198      w
15    147     64    109    258      w
Binding TFs: T10638 (Myb-like DNA-binding domain, MYB-CC type transfactor, LHEQLE motif)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.