DNA Binding Motif
| Accessions: | MA0110.3 (JASPAR 2024) |
| Names: | ATHB-5 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | wwCAATCATTww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 3639 1914 1346 3223 w 02 2718 2228 1336 3840 w 03 1051 7517 386 1168 C 04 9632 197 74 219 A 05 9563 154 50 355 A 06 230 98 59 9735 T 07 841 8049 254 978 C 08 9809 48 51 214 A 09 648 178 175 9121 T 10 633 312 394 8783 T 11 3099 1661 2309 3053 w 12 3606 1561 1609 3346 w |
| Type: | Heterodimer |
| Binding TFs: | P46667 (Homeobox domain, Homeobox associated leucine zipper) P46667 |
| Binding Sites: | MA0110.3.1 MA0110.3.10 MA0110.3.11 / MA0110.3.6 MA0110.3.12 / MA0110.3.7 MA0110.3.13 / MA0110.3.8 MA0110.3.14 / MA0110.3.9 MA0110.3.15 MA0110.3.10 / MA0110.3.16 MA0110.3.11 / MA0110.3.17 MA0110.3.12 / MA0110.3.18 MA0110.3.19 MA0110.3.2 MA0110.3.20 MA0110.3.1 / MA0110.3.3 MA0110.3.2 / MA0110.3.4 MA0110.3.5 MA0110.3.3 / MA0110.3.6 MA0110.3.4 / MA0110.3.7 MA0110.3.5 / MA0110.3.8 MA0110.3.9 MA0110.3.13 MA0110.3.14 MA0110.3.15 MA0110.3.16 MA0110.3.17 MA0110.3.18 MA0110.3.19 MA0110.3.20 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.