DNA Binding Motif
| Accessions: | UP00367A_1 (UniPROBE 20160601) |
| Names: | hlh-23, MXL-3 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | yrdamCACGTGktymr |
| Weblogo: | |
| PSSM: | P0 A C G T 01 0.18 0.32 0.20 0.30 y 02 0.29 0.20 0.29 0.22 r 03 0.26 0.14 0.30 0.29 d 04 0.67 0.09 0.17 0.07 a 05 0.28 0.61 0.10 0.02 m 06 0.04 0.96 0 0 C 07 0.97 0 0.01 0.01 A 08 0 0.95 0 0.04 C 09 0.04 0 0.95 0 G 10 0.01 0.01 0 0.97 T 11 0 0 0.96 0.04 G 12 0.02 0.10 0.61 0.28 k 13 0.14 0.22 0.09 0.55 t 14 0.14 0.39 0.15 0.32 y 15 0.26 0.28 0.22 0.25 m 16 0.32 0.11 0.36 0.22 r |
| Binding TFs: | UP00367A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACGTG ACACGTGC ACACGTGG ACACGTGT ACCACGTG AGCACGTG ATCACGTG CACACGTG CACGTGAC CACGTGCA CACGTGCG CACGTGGA CACGTGGC CACGTGGG CACGTGTA CACGTGTC CCACGTGA CCACGTGC CCACGTGG GCACGTGC |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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