DNA Binding Motif

						

			
Accessions: MA1749.1 (JASPAR 2024)

			
Names: E2FC
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 15
Consensus: AwwwwGGCGCCAAAR
Weblogo: 
PSSM: P0      A      C      G      T
01    913 86.957      0      0      A
02    348      0    130    522      w
03    391      0    217    391      w
04    348      0    217    435      w
05 260.87      0    217    522      w
06    174 43.478    783      0      G
07      0 43.478    783    174      G
08    217    783      0      0      C
09      0      0   1000      0      G
10      0   1000      0      0      C
11      0   1000      0      0      C
12    913 86.957      0      0      A
13    826 86.957      0 86.957      A
14    913      0 86.957      0      A
15    696      0 260.87 43.478      R
Type: Heterodimer
Binding TFs: Q9FV70 (E2F/DP family winged-helix DNA-binding domain)
Q9FV70
			
Publications: Vandepoele K, Vlieghe K, Florquin K, Hennig L, Beemster GT, Gruissem W, Van de Peer Y, Inzé D, De Veylder L. Genome-wide identification of potential plant E2F target genes. Plant Physiol 139:316-28 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.