DNA Binding Motif

						

			
Accessions: 3n97_ABC (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor
Organisms: Thermus aquaticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: RNA polymerase alpha C-terminal domain (E. coli) and sigma region 4 (T. aq. mutant) bound to (UP,-35 element) DNA
Length: 5
Consensus: TCAAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0     96      0      0      C
03     78      6      6      6      A
04     85      5      3      3      A
05      4      4     81      7      G
Binding TFs: 3n97_A (Sigma-70, region 4)
Binding Sites: 3n97_M
3n97_N
			
Publications: Lara-Gonzalez S, Dantas Machado AC, Rao S, Napoli AA, Birktoft J, Di Felice R, Rohs R, Lawson CL. The RNA Polymerase α Subunit Recognizes the DNA Shape of the Upstream Promoter Element. Biochemistry 59:4523-4532 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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