DNA Binding Motif

						

			
Accessions: RARA_full_3 (HumanTF 1.0)

			
Names: RARA
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 3
Length: 17
Consensus: AGGTCAasyArAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01   4701     39    800      5      A
02      1      4   4339      4      G
03      0      2   4008    461      G
04     18     20     55   4881      T
05      8   7169     71     23      C
06   5979      7     52      0      A
07   3316    605    480   1102      a
08    806   1707   1685    662      s
09    658   1247   1086   1736      y
10   4267    343    379    924      A
11   2890    110   2448     52      r
12   4784     27    834      0      A
13      2      1   4252      0      G
14      2      7   4259     69      G
15     21     62     29   4849      T
16     63   7209     18     31      C
17   5808      8     29      2      A
Binding TFs: RARA_full (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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