DNA Binding Motif

						

			
Accessions: MA0359.2 (JASPAR 2024)

			
Names: RAP1
Organisms: Saccharomyces cerevisiae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-exo
Length: 15
Consensus: drTGTaTGGGTGTww
Weblogo: 
PSSM: P0      A      C      G      T
01    101     17    134     84      d
02    200     10    105     21      r
03      3      4     39    290      T
04      4      5    317     10      G
05     13     27      4    292      T
06    214     36     51     35      a
07      9     54      0    273      T
08      6      0    327      3      G
09      0      0    318     18      G
10     48      5    281      2      G
11      1      5      2    328      T
12      3     18    264     51      G
13     27     48     24    237      T
14    146     22     68    100      w
15    106     50     58    122      w
Type: Heterodimer
Binding TFs: P11938 (Myb-like DNA-binding domain, Rap1, DNA-binding, Rap1 - C terminal domain)
P11938
Binding Sites: MA0359.2.1 / MA0359.2.2
MA0359.2.10 / MA0359.2.14
MA0359.2.11 / MA0359.2.15
MA0359.2.12 / MA0359.2.16
MA0359.2.13 / MA0359.2.19 / MA0359.2.20
MA0359.2.14 / MA0359.2.17
MA0359.2.15 / MA0359.2.18
MA0359.2.16 / MA0359.2.19
MA0359.2.2 / MA0359.2.3
MA0359.2.3 / MA0359.2.4
MA0359.2.4 / MA0359.2.5
MA0359.2.5 / MA0359.2.7
MA0359.2.6 / MA0359.2.8
MA0359.2.10 / MA0359.2.13 / MA0359.2.7 / MA0359.2.9
MA0359.2.11 / MA0359.2.8
MA0359.2.1
MA0359.2.12 / MA0359.2.9
MA0359.2.17
MA0359.2.18
MA0359.2.20
MA0359.2.6
			
Publications: Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.