DNA Binding Motif

						

			
Accessions: FOXA1_HUMAN.H10MO.A|M01142 (HOCOMOCO 10)

			
Names: FOXA1
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Forkhead box (FOX) factors{3.3.1}; FOXA{3.3.1.1}
Length: 13
Consensus: aTrTTTACwywgy
Weblogo: 
PSSM: P0      A      C      G      T
01    199     91     94    116      a
02      4      2      2    492      T
03    179      0    321      0      r
04     11      0      1    488      T
05      4      2     38    456      T
06      0      0     68    432      T
07    371     12    116      1      A
08      0    455      5     40      C
09    223     31      1    245      w
10     10    160     55    275      y
11    223      2      8    267      w
12    118     73    199    110      g
13     50    175    104    171      y
Binding TFs: FOXA1_HUMAN (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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